Presence of Clostridium difficile in pig faecal samples and wild animal species associated with pig farms

J Appl Microbiol. 2017 Feb;122(2):462-472. doi: 10.1111/jam.13343. Epub 2016 Dec 18.

Abstract

Aims: To determine the presence of Clostridium difficile on fattening pig farms in north-eastern Spain.

Methods and results: Twenty-seven farms were sampled. Pools of pig faecal samples (n = 210), samples of intestinal content from common farm pest species (n = 95) and environment-related samples (n = 93) were collected. Isolates were tested for toxin genes of C. difficile, and typed by PCR-ribotyping and toxinotyping. The minimal inhibitory concentrations of six antimicrobial agents were determined using Etest. Thirty-four isolates were obtained from 12 farms, and 30 (88·2%) had toxin genes. Seven ribotypes were identified. Ribotype 078 and its variant 126 were predominant (52·9%). The same ribotypes were isolated from different animal species on the same farm. None of the isolates were resistant to metronidazole or vancomycin.

Conclusions: Clostridium difficile was common within the pig farm environment. Most of the positive samples came from pest species or were pest-related environmental samples.

Significance and impact of the study: Pest species were colonized with toxigenic and antimicrobial-resistant C. difficile strains of the same ribotypes that are found in humans and pigs. Rodents and pigeons may transmit toxigenic and antimicrobial-resistant C. difficile strains that are of the same ribotypes as those occuring in humans.

Keywords: Clostridium difficile; PCR-ribotyping; environment; pig; rodents; toxins; wildlife.

MeSH terms

  • Animals
  • Animals, Wild
  • Anti-Bacterial Agents / pharmacology*
  • Clostridioides difficile / classification
  • Clostridioides difficile / isolation & purification*
  • Clostridium Infections / transmission*
  • Clostridium Infections / veterinary
  • Farms
  • Feces / microbiology*
  • Humans
  • Metronidazole / pharmacology
  • Microbial Sensitivity Tests
  • Polymerase Chain Reaction
  • Ribotyping
  • Spain
  • Sus scrofa

Substances

  • Anti-Bacterial Agents
  • Metronidazole

Associated data

  • GENBANK/KX378382
  • GENBANK/KX378383
  • GENBANK/KX378384