Absolute Minimal Sampling in High-Dimensional NMR Spectroscopy

Angew Chem Int Ed Engl. 2016 Nov 2;55(45):14169-14172. doi: 10.1002/anie.201608048. Epub 2016 Oct 10.

Abstract

Standard three-dimensional Fourier transform (FT) NMR experiments of molecular systems often involve prolonged measurement times due to extensive sampling required along the indirect time domains to obtain adequate spectral resolution. In recent years, a wealth of alternative sampling methods has been proposed to ease this bottleneck. However, due to their algorithmic complexity, for a given sample and experiment it is often hard to determine the minimal sampling requirement, and hence the maximal achievable experimental speed up. Herein we introduce an absolute minimal sampling (AMS) method that can be applied to common 3D NMR experiments. We show for the proteins ubiquitin and arginine kinase that for widely used experiments, such as 3D HNCO, accurate carbon frequencies can be obtained with a single time increment, while for others, such as 3D HN(CA)CO, all relevant information is obtained with as few as 6 increments amounting to a speed up of a factor 7-50.

Keywords: NMR spectroscopy; minimal sampling; non-linear least-squares time-domain fitting; protein structures.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms
  • Arginine Kinase / chemistry*
  • Arginine Kinase / metabolism
  • Fourier Analysis
  • Nuclear Magnetic Resonance, Biomolecular*
  • Ubiquitin / chemistry*

Substances

  • Ubiquitin
  • Arginine Kinase