Radiation damage to single stranded oligonucleotide trimers labelled with 5-iodopyrimidines

Org Biomol Chem. 2016 Oct 4;14(39):9331-9337. doi: 10.1039/c6ob01713d.

Abstract

The radiolysis of deoxygenated aqueous solution containing trimeric oligonucleotides labelled with iodinated pyrimidines and Tris-HCl as the hydroxyl radical scavenger leads to electron attachment to the halogenated bases that mainly results in single strand breaks. The iodinated trimers are 2-fold more sensitive to solvated electrons than the brominated oligonucleotides, which is explained by the barrier-free dissociation of the iodinated base anions. The present study fills the literature gap concerning the chemistry triggered by ionizing radiation in the iodinated pyrimidines incorporated into DNA.

MeSH terms

  • Chromatography, High Pressure Liquid
  • DNA, Single-Stranded
  • Electrons
  • Hydroxyl Radical
  • Idoxuridine / analogs & derivatives
  • Idoxuridine / chemistry
  • Iodine / chemistry
  • Mass Spectrometry / methods
  • Oligonucleotides / chemistry*
  • Oligonucleotides / radiation effects*
  • Pyrimidines / chemistry
  • Radiation, Ionizing

Substances

  • DNA, Single-Stranded
  • Oligonucleotides
  • Pyrimidines
  • 5-iodouridine
  • Hydroxyl Radical
  • Iodine
  • Idoxuridine