Formic acid hydrolysis/liquid chromatography isotope dilution mass spectrometry: An accurate method for large DNA quantification

J Chromatogr A. 2016 Oct 14:1468:109-115. doi: 10.1016/j.chroma.2016.09.031. Epub 2016 Sep 14.

Abstract

Liquid chromatography-isotope dilution mass spectrometry (LC-IDMS) with formic acid hydrolysis was established for the accurate quantification of λDNA. The over-decomposition of nucleobases in formic acid hydrolysis was restricted by optimizing the reaction temperature and the reaction time, and accurately corrected by using deoxynucleotides (dNMPs) and isotope-labeled dNMPs as the calibrator and the internal standard, respectively. The present method could quantify λDNA with an expanded uncertainty of 4.6% using 10fmol of λDNA. The analytical results obtained with the present method were validated by comparing with the results of phosphate-base quantification by inductively coupled plasma-mass spectrometry (ICP-MS). The results showed good agreement with each other. We conclude that the formic acid hydrolysis/LC-IDMS method can quantify λDNA accurately and is promising as the primary method for the certification of DNA as reference material.

Keywords: DNA quantification; Formic acid hydrolysis; Isotope dilution mass spectrometry; LC/MS/MS; Nucleobases.

MeSH terms

  • Bacteriophage lambda / genetics
  • Calibration
  • Chemistry Techniques, Analytical / methods*
  • Chemistry Techniques, Analytical / standards
  • Chromatography, Liquid*
  • DNA / analysis*
  • Formates / chemistry*
  • Hydrolysis
  • Isotope Labeling
  • Mass Spectrometry*

Substances

  • Formates
  • formic acid
  • DNA