In-house quantitative real-time PCR for the diagnosis of hepatitis B virus and hepatitis C virus infections

Braz J Microbiol. 2016 Oct-Dec;47(4):987-992. doi: 10.1016/j.bjm.2016.07.008. Epub 2016 Jul 27.

Abstract

The quantification of viral nucleic acids in serum by real-time PCR plays an important role in diagnosing hepatitis B virus and hepatitis C virus infection. In this study, we developed an assay using specific primers and probes to quantify hepatitis B virus DNA or hepatitis C virus RNA in serum from infected patients. For standardization and validation of the assay, an international panel of hepatitis B virus/hepatitis C virus and standard plasmids was used. A correlation coefficient of 0.983 and 0.963 for hepatitis B virus and hepatitis C virus, respectively, was obtained based on cycle threshold values and concentrations of DNA or RNA. The standard curve showed a linear relationship from 19IU/mL to 1.9×109IU/mL of serum, with a coefficient of determination (r2) of 0.99. In sera from patients infected with hepatitis B virus or hepatitis C virus viral loads (19IU/mL and 1.9×109IU/mL), we quantified viral loads with a detection limit of 1.9×102IU/mL. The real-time quantitative PCR assay developed in this study provides an ideal system for routine diagnosis and confirmation of indeterminate serological results, especially in immunosuppressed patients.

Keywords: Hepatitis B; Hepatitis C; qPCR.

MeSH terms

  • DNA, Viral
  • Hepacivirus / genetics*
  • Hepatitis B / diagnosis*
  • Hepatitis B / virology*
  • Hepatitis B virus / genetics*
  • Hepatitis C / diagnosis*
  • Hepatitis C / virology*
  • Humans
  • RNA, Viral
  • Real-Time Polymerase Chain Reaction
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Viral Load*

Substances

  • DNA, Viral
  • RNA, Viral