Transcriptomic response of Drosophila melanogaster pupae developed in hypergravity

Genomics. 2016 Oct;108(3-4):158-167. doi: 10.1016/j.ygeno.2016.09.002. Epub 2016 Sep 10.

Abstract

Altered gravity can perturb normal development and induce corresponding changes in gene expression. Understanding this relationship between the physical environment and a biological response is important for NASA's space travel goals. We use RNA-Seq and qRT-PCR techniques to profile changes in early Drosophila melanogaster pupae exposed to chronic hypergravity (3g, or three times Earth's gravity). During the pupal stage, D. melanogaster rely upon gravitational cues for proper development. Assessing gene expression changes in the pupae under altered gravity conditions helps highlight gravity-dependent genetic pathways. A robust transcriptional response was observed in hypergravity-treated pupae compared to controls, with 1513 genes showing a significant (q<0.05) difference in gene expression. Five major biological processes were affected: ion transport, redox homeostasis, immune response, proteolysis, and cuticle development. This outlines the underlying molecular and biological changes occurring in Drosophila pupae in response to hypergravity; gravity is important for many biological processes on Earth.

Keywords: Drosophila melanogaster; Hypergravity; Metamorphosis; Pupae; RNA-Seq; Transcriptome.

MeSH terms

  • Animals
  • Drosophila Proteins / genetics*
  • Drosophila Proteins / metabolism
  • Drosophila melanogaster / embryology
  • Drosophila melanogaster / genetics*
  • Gene Expression Regulation, Developmental*
  • Hypergravity*
  • Pupa / genetics
  • Transcriptome*

Substances

  • Drosophila Proteins