Applications of the BLEND Software to Crystallographic Data from Membrane Proteins

Adv Exp Med Biol. 2016:922:119-135. doi: 10.1007/978-3-319-35072-1_9.

Abstract

X-ray diffraction from crystals of membrane proteins very often yields incomplete datasets due to, among other things, severe radiation damage. Multiple crystals are thus required to form complete datasets, provided the crystals themselves are isomorphous. Selection and combination of data from multiple crystals is a difficult and tedious task that can be facilitated by purpose-built software. BLEND, in the CCP4 suite of programs for macromolecular crystallography (MX), has been created exactly for this reason. In this chapter the program is described and its workings illustrated by means of data from two membrane proteins.

Keywords: Blend; Cluster analysis; Data merging; Data scaling; Isomorphism; Membrane proteins; Multiple crystals; Radiation damage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Computer Graphics
  • Crystallography, X-Ray*
  • Haemophilus influenzae / chemistry
  • Humans
  • Mathematical Computing
  • Membrane Proteins / chemistry*
  • Membrane Proteins / radiation effects
  • Receptors, Histamine H1 / chemistry
  • Software*

Substances

  • Bacterial Proteins
  • Membrane Proteins
  • Receptors, Histamine H1