A Novel SimpleProbe PCR Assay for Detection of Mutations in the 23S rRNA Gene Associated with Macrolide Resistance in Mycoplasma genitalium in Clinical Samples

J Clin Microbiol. 2016 Oct;54(10):2563-7. doi: 10.1128/JCM.01233-16. Epub 2016 Aug 3.

Abstract

Macrolide-resistant strains of Mycoplasma genitalium are an increasing problem throughout the world, and the implementation of a rapid and sensitive assay for mutation detection to guide treatment is needed. Macrolide-resistant strains have been shown to contain base substitutions in positions 2058 and 2059 (Escherichia coli numbering) in region V of the 23S rRNA gene. In this study, we present a SimpleProbe PCR followed by melting curve analysis to differentiate between macrolide-resistant mutants and wild types. The assay was performed on 159 Mycoplasma genitalium-positive samples, and the results were compared with DNA sequencing. We also looked at the prevalence of macrolide-resistant strains in a Norwegian population. Of 139 samples characterized successfully by sequencing, 54 (39%) were wild types and 85 (61%) were mutants, consisting of 59 (42%) A2059G, 24 (17%) A2058G, 1 (1%) A2058T, and 1 (1%) A2059C mutation. The melting curve analysis correctly differentiated between wild-type and mutant strains in all cases, but it could not identify the different mutant types. The SimpleProbe PCR proved to be a simple, rapid, and reliable method for the detection of macrolide-resistant isolates of Mycoplasma genitalium in a clinical setting.

Publication types

  • Evaluation Study

MeSH terms

  • Adolescent
  • Adult
  • Anti-Bacterial Agents / pharmacology*
  • Drug Resistance, Bacterial
  • Female
  • Genotyping Techniques / methods
  • Humans
  • Macrolides / pharmacology*
  • Male
  • Microbial Sensitivity Tests / methods
  • Middle Aged
  • Mutation*
  • Mycoplasma Infections / microbiology*
  • Mycoplasma genitalium / drug effects
  • Mycoplasma genitalium / genetics*
  • Mycoplasma genitalium / isolation & purification
  • Polymerase Chain Reaction / methods*
  • RNA, Ribosomal, 23S / genetics*
  • Transition Temperature
  • Young Adult

Substances

  • Anti-Bacterial Agents
  • Macrolides
  • RNA, Ribosomal, 23S

Grants and funding

This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.