Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells

Biochim Biophys Acta. 2016 Oct;1859(10):1259-68. doi: 10.1016/j.bbagrm.2016.07.004. Epub 2016 Jul 14.

Abstract

Signaling lymphocytic activation molecule family member 1 (SLAMF1)/CD150 is a co-stimulatory receptor expressed on a variety of hematopoietic cells, in particular on mature lymphocytes activated by specific antigen, costimulation and cytokines. Changes in CD150 expression level have been reported in association with autoimmunity and with B-cell chronic lymphocytic leukemia. We characterized the core promoter for SLAMF1 gene in human B-cell lines and explored binding sites for a number of transcription factors involved in B cell differentiation and activation. Mutations of SP1, STAT6, IRF4, NF-kB, ELF1, TCF3, and SPI1/PU.1 sites resulted in significantly decreased promoter activity of varying magnitude, depending on the cell line tested. The most profound effect on the promoter strength was observed upon mutation of the binding site for Early B-cell factor 1 (EBF1). This mutation produced a 10-20 fold drop in promoter activity and pinpointed EBF1 as the master regulator of human SLAMF1 gene in B cells. We also identified three potent transcriptional enhancers in human SLAMF1 locus, each containing functional EBF1 binding sites. Thus, EBF1 interacts with specific binding sites located both in the promoter and in the enhancer regions of the SLAMF1 gene and is critical for its expression in human B cells.

Keywords: B cell; EBF1; RNA isoform; SLAMF; Transcriptional regulation; Trascription factor.

MeSH terms

  • B-Lymphocytes / cytology
  • B-Lymphocytes / metabolism
  • Basic Helix-Loop-Helix Transcription Factors / genetics
  • Basic Helix-Loop-Helix Transcription Factors / metabolism
  • Binding Sites
  • Cell Line, Tumor
  • Enhancer Elements, Genetic
  • Gene Expression Regulation*
  • Genes, Reporter
  • HEK293 Cells
  • Humans
  • Interferon Regulatory Factors / genetics
  • Interferon Regulatory Factors / metabolism
  • Luciferases / genetics
  • Mutation
  • NF-kappa B / genetics
  • NF-kappa B / metabolism
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Primary Cell Culture
  • Promoter Regions, Genetic
  • Protein Binding
  • Proto-Oncogene Proteins / genetics
  • Proto-Oncogene Proteins / metabolism
  • STAT6 Transcription Factor / genetics
  • STAT6 Transcription Factor / metabolism
  • Signal Transduction
  • Signaling Lymphocytic Activation Molecule Family Member 1 / genetics*
  • Signaling Lymphocytic Activation Molecule Family Member 1 / metabolism
  • Sp1 Transcription Factor / genetics
  • Sp1 Transcription Factor / metabolism
  • Trans-Activators / genetics*
  • Trans-Activators / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcription, Genetic*

Substances

  • Basic Helix-Loop-Helix Transcription Factors
  • EBF1 protein, human
  • ELF1 protein, human
  • Interferon Regulatory Factors
  • NF-kappa B
  • Nuclear Proteins
  • Proto-Oncogene Proteins
  • SLAMF1 protein, human
  • STAT6 Transcription Factor
  • STAT6 protein, human
  • Sp1 Transcription Factor
  • SP1 protein, human
  • TCF3 protein, human
  • Trans-Activators
  • Transcription Factors
  • interferon regulatory factor-4
  • proto-oncogene protein Spi-1
  • Signaling Lymphocytic Activation Molecule Family Member 1
  • Luciferases