Assessment of DNA-binding affinity of cholinesterase reactivators and electrophoretic determination of their effect on topoisomerase I and II activity

Mol Biosyst. 2016 Aug 16;12(9):2910-20. doi: 10.1039/c6mb00332j.

Abstract

In this paper, we describe the biochemical properties and biological activity of a series of cholinesterase reactivators (symmetrical bisquaternary xylene-linked compounds, K106-K114) with ctDNA. The interaction of the studied derivatives with ctDNA was investigated using UV-Vis, fluorescence, CD and LD spectrometry, and electrophoretic and viscometric methods. The binding constants K were estimated to be in the range 1.05 × 10(5)-5.14 × 10(6) M(-1) and the percentage of hypochromism was found to be 10.64-19.28% (from UV-Vis titration). The used methods indicate that the studied samples are groove binders. Electrophoretic methods proved that the studied compounds clearly influence calf thymus Topo I (at 5 μM concentration, except for compounds K107, K111 and K114 which were effective at higher concentrations) and human Topo II (K110 partially inhibited Topo II effects even at 5 μM concentration) activity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cholinesterase Reactivators / chemistry*
  • Cholinesterase Reactivators / pharmacology
  • Circular Dichroism
  • DNA / chemistry*
  • DNA / metabolism
  • DNA Topoisomerases, Type I / chemistry*
  • DNA Topoisomerases, Type I / metabolism
  • DNA Topoisomerases, Type II / chemistry*
  • DNA Topoisomerases, Type II / metabolism
  • Molecular Structure
  • Nucleic Acid Denaturation
  • Protein Binding
  • Spectrum Analysis
  • Viscosity

Substances

  • Cholinesterase Reactivators
  • DNA
  • DNA Topoisomerases, Type I
  • DNA Topoisomerases, Type II