Targeted HIV-1 Latency Reversal Using CRISPR/Cas9-Derived Transcriptional Activator Systems

PLoS One. 2016 Jun 24;11(6):e0158294. doi: 10.1371/journal.pone.0158294. eCollection 2016.

Abstract

CRISPR/Cas9 technology is currently considered the most advanced tool for targeted genome engineering. Its sequence-dependent specificity has been explored for locus-directed transcriptional modulation. Such modulation, in particular transcriptional activation, has been proposed as key approach to overcome silencing of dormant HIV provirus in latently infected cellular reservoirs. Currently available agents for provirus activation, so-called latency reversing agents (LRAs), act indirectly through cellular pathways to induce viral transcription. However, their clinical performance remains suboptimal, possibly because reservoirs have diverse cellular identities and/or proviral DNA is intractable to the induced pathways. We have explored two CRISPR/Cas9-derived activator systems as targeted approaches to induce dormant HIV-1 proviral DNA. These systems recruit multiple transcriptional activation domains to the HIV 5' long terminal repeat (LTR), for which we have identified an optimal target region within the LTR U3 sequence. Using this target region, we demonstrate transcriptional activation of proviral genomes via the synergistic activation mediator complex in various in culture model systems for HIV latency. Observed levels of induction are comparable or indeed higher than treatment with established LRAs. Importantly, activation is complete, leading to production of infective viral particles. Our data demonstrate that CRISPR/Cas9-derived technologies can be applied to counteract HIV latency and may therefore represent promising novel approaches in the quest for HIV elimination.

MeSH terms

  • Base Sequence
  • Binding Sites
  • CRISPR-Cas Systems*
  • Gene Editing
  • Gene Targeting*
  • HIV Infections / virology*
  • HIV Long Terminal Repeat
  • HIV-1 / physiology*
  • Humans
  • Jurkat Cells
  • Protein Binding
  • Proviruses* / genetics
  • RNA, Guide, CRISPR-Cas Systems
  • Transcriptional Activation
  • Virus Latency* / genetics
  • Virus Replication

Substances

  • RNA, Guide, CRISPR-Cas Systems

Grants and funding

UCL was supported by a Clinical Leave Stipend from the German Center of Infection Research (grant TI07.001; http://www.dzif.de). GAD was supported by a MD/PhD stipend from the German Center of Infection Research (grant TI07.002; http://www.dzif.de). This work received support from the “Viral Latency” program at the Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany (http://www.hpi-hamburg.de). The publication of this article was funded by the Open Access Fund of the Leibniz Association. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.