Mutations Closer to the Active Site Improve the Promiscuous Aldolase Activity of 4-Oxalocrotonate Tautomerase More Effectively than Distant Mutations

Chembiochem. 2016 Jul 1;17(13):1225-8. doi: 10.1002/cbic.201600149. Epub 2016 May 30.

Abstract

The enzyme 4-oxalocrotonate tautomerase (4-OT), which catalyzes enol-keto tautomerization as part of a degradative pathway for aromatic hydrocarbons, promiscuously catalyzes various carbon-carbon bond-forming reactions. These include the aldol condensation of acetaldehyde with benzaldehyde to yield cinnamaldehyde. Here, we demonstrate that 4-OT can be engineered into a more efficient aldolase for this condensation reaction, with a >5000-fold improvement in catalytic efficiency (kcat /Km ) and a >10(7) -fold change in reaction specificity, by exploring small libraries in which only "hotspots" are varied. The hotspots were identified by systematic mutagenesis (covering each residue), followed by a screen for single mutations that give a strong improvement in the desired aldolase activity. All beneficial mutations were near the active site of 4-OT, thus underpinning the notion that new catalytic activities of a promiscuous enzyme are more effectively enhanced by mutations close to the active site.

Keywords: aldolase activity; catalytic promiscuity; mutagenesis; oxalocrotonate tautomerase; protein engineering.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldehyde-Lyases / chemistry*
  • Aldehyde-Lyases / genetics
  • Catalysis
  • Catalytic Domain
  • Codon
  • Isomerases / chemistry*
  • Isomerases / genetics
  • Kinetics
  • Mutation
  • Protein Engineering
  • Pseudomonas putida / enzymology

Substances

  • Codon
  • Aldehyde-Lyases
  • 4-oxalocrotonate tautomerase
  • Isomerases