SUMO-Modification of the La Protein Facilitates Binding to mRNA In Vitro and in Cells

PLoS One. 2016 May 25;11(5):e0156365. doi: 10.1371/journal.pone.0156365. eCollection 2016.

Abstract

The RNA-binding protein La is involved in several aspects of RNA metabolism including the translational regulation of mRNAs and processing of pre-tRNAs. Besides its well-described phosphorylation by Casein kinase 2, the La protein is also posttranslationally modified by the Small Ubiquitin-like MOdifier (SUMO), but the functional outcome of this modification has not been defined. The objective of this study was to test whether sumoylation changes the RNA-binding activity of La. Therefore, we established an in vitro sumoylation assay for recombinant human La and analyzed its RNA-binding activity by electrophoretic mobility shift assays. We identified two novel SUMO-acceptor sites within the La protein located between the RNA recognition motif 1 and 2 and we demonstrate for the first time that sumoylation facilitates the RNA-binding of La to small RNA oligonucleotides representing the oligopyrimidine tract (TOP) elements from the 5' untranslated regions (UTR) of mRNAs encoding ribosomal protein L22 and L37 and to a longer RNA element from the 5' UTR of cyclin D1 (CCND1) mRNA in vitro. Furthermore, we show by RNA immunoprecipitation experiments that a La mutant deficient in sumoylation has impaired RNA-binding activity in cells. These data suggest that modulating the RNA-binding activity of La by sumoylation has important consequences on its functionality.

MeSH terms

  • 3' Untranslated Regions
  • Binding Sites
  • Cyclin D1 / genetics*
  • Electrophoretic Mobility Shift Assay
  • Humans
  • Phosphoproteins / chemistry
  • Phosphoproteins / metabolism*
  • Protein Binding
  • Protein Processing, Post-Translational
  • RNA, Messenger / metabolism*
  • Ribosomal Proteins / genetics*
  • Sumoylation

Substances

  • 3' Untranslated Regions
  • CCND1 protein, human
  • La protein, human
  • Phosphoproteins
  • RNA, Messenger
  • Ribosomal Proteins
  • Cyclin D1