A NADH-accepting imine reductase variant: Immobilization and cofactor regeneration by oxidative deamination

J Biotechnol. 2016 Jul 20:230:11-8. doi: 10.1016/j.jbiotec.2016.05.006. Epub 2016 May 6.

Abstract

Engineering cofactor specificity of enzymes is a promising approach that can expand the application of enzymes for biocatalytic production of industrially relevant chemicals. Until now, only NADPH-dependent imine reductases (IREDs) are known. This limits their applications to reactions employing whole cells as a cost-efficient cofactor regeneration system. For applications of IREDs as cell-free catalysts, (i) we created an IRED variant showing an improved activity for NADH. With rational design we were able to identify four residues in the (R)-selective IRED from Streptomyces GF3587 (IR-Sgf3587), which coordinate the 2'-phosphate moiety of the NADPH cofactor. From a set of 15 variants, the highest NADH activity was caused by the single amino acid exchange K40A resulting in a 3-fold increased acceptance of NADH. (ii) We showed its applicability using an immobilisate obtained either from purified enzyme or from lysate using the EziG(™) carriers. Applying the variant and NADH, we reached 88% conversion in a preparative scale biotransformation when employing 4% (w/v) 2-methylpyrroline. (iii) We demonstrated a one-enzyme cofactor regeneration approach using the achiral amine N-methyl-3-aminopentanone as a hydrogen donor co-substrate.

Keywords: Cofactor specificity; Coupled oxidative deamination; Imine reductase; Immobilization; Preparative scale biocatalysis; Rational design.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Deamination
  • Enzymes, Immobilized / chemistry
  • Enzymes, Immobilized / genetics
  • Enzymes, Immobilized / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Imines / metabolism*
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • NAD / metabolism*
  • Oxidoreductases / chemistry
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism*
  • Streptomyces / enzymology
  • Streptomyces / genetics

Substances

  • Bacterial Proteins
  • Enzymes, Immobilized
  • Imines
  • Recombinant Proteins
  • NAD
  • Oxidoreductases