Typhoon Soudelor was one of the strongest storms in the world in 2015. The category 5 hurricane made landfall in Taiwan on August 8, causing extensive damage and severe impacts on the environment. This paper describes the changes of trihalomethane (THM) concentrations in tap and drinking fountain water in selected typhoon-affected areas in Taipei before and after the typhoon. Samples were taken from water transmission mains at various distances from the local water treatment plant. The results showed that organic matter increased between pre- and post-typhoon periods with a greater proportion of aromatic compounds. Although drinking fountains showed moderately less total trihalomethane (TTHM) levels than that of tap water, the intake of high turbidity water considerably diminished the efficiency of their purification systems after the typhoon. The percentage distribution of THM species increased throughout the distribution network, probably due to a longer contact time between chlorine and the organic matter in the pipelines. After 2 to 5 min of boiling, THM reduction was considerable in all cases with the greater extent in post-typhoon samples. It is evident that extreme weather conditions may have a severe impact on water quality, and thus more cautious strategies should be adopted in such cases.