Pittosporum cryptic virus 1: genome sequence completion using next-generation sequencing

Arch Virol. 2016 Jul;161(7):2039-42. doi: 10.1007/s00705-016-2860-5. Epub 2016 Apr 18.

Abstract

Next-generation sequencing (NGS) was applied to dsRNAs extracted from an Italian pittosporum plant infected with pittosporum cryptic virus 1 (PiCV1). NGS allowed assembly of the full genome sequence of PiCV1, comprising dsRNA1 (1.9 kbp) and dsRNA2 (1.5 kbp), which encode the RNA-dependent RNA polymerase and capsid protein genes, respectively. Phylogenetic and sequence analyses confirmed that PiCV1 is a new member of the genus Deltapartitivirus, family Partiviridae. From the same plant, NSG also permitted assembly of the complete genome sequence of eggplant mottled dwarf virus (EMDV), which shared 86 % to 98 % nucleotide sequence identity with complete and partial sequences (ca 6750 nt) of other known EMDV isolates with sequences available in the GenBank database.

MeSH terms

  • Base Sequence
  • Capsid Proteins / genetics
  • Genome, Viral*
  • High-Throughput Nucleotide Sequencing
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • RNA Viruses / classification
  • RNA Viruses / genetics*
  • RNA Viruses / immunology
  • RNA, Viral / genetics

Substances

  • Capsid Proteins
  • RNA, Viral