Impacts of the charged residues mutation S48E/N62H on the thermostability and unfolding behavior of cold shock protein: insights from molecular dynamics simulation with Gō model

J Mol Model. 2016 Apr;22(4):91. doi: 10.1007/s00894-016-2958-4. Epub 2016 Mar 28.

Abstract

The cold shock protein from the hyperthermophile Thermotoga maritima (Tm-Csp) exhibits significantly higher thermostability than its homologue from the thermophile Bacillus caldolyticus (Bc-Csp). Experimental studies have shown that the electrostatic interactions unique to Tm-Csp are responsible for improving its thermostability. In the present work, the favorable charged residues in Tm-Csp were grafted into Bc-Csp by a double point mutation of S48E/N62H, and the impacts of the mutation on the thermostability and unfolding/folding behavior of Bc-Csp were then investigated by using a modified Gō model, in which the electrostatic interactions between charged residues were considered in the model. Our simulation results show that this Tm-Csp-like charged residue mutation can effectively improve the thermostability of Bc-Csp without changing its two-state folding mechanism. Besides that, we also studied the unfolding kinetics and unfolding/folding pathway of the wild-type Bc-Csp and its mutant. It is found that this charged residue mutation obviously enhanced the stability of the C-terminal region of Bc-Csp, which decreases the unfolding rate and changes the unfolding/folding pathway of the protein. Our studies indicate that the thermostability, unfolding kinetics and unfolding/folding pathway of Bc-Csp can be artificially changed by introducing Tm-Csp-like favorable electrostatic interactions into Bc-Csp.

Keywords: Coarse-grained model; Electrostatic interactions; Folding/unfolding; Langevin dynamics simulation; Thermophilic protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution*
  • Bacillus / chemistry
  • Bacillus / metabolism
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Heat-Shock Proteins / chemistry*
  • Heat-Shock Proteins / genetics
  • Hydrogen Bonding
  • Hydrophobic and Hydrophilic Interactions
  • Kinetics
  • Molecular Dynamics Simulation*
  • Mutation*
  • Protein Domains
  • Protein Stability
  • Protein Structure, Secondary
  • Protein Unfolding
  • Species Specificity
  • Static Electricity
  • Thermotoga maritima / chemistry*
  • Thermotoga maritima / metabolism

Substances

  • Bacterial Proteins
  • Heat-Shock Proteins