Biosynthetic investigation of phomopsins reveals a widespread pathway for ribosomal natural products in Ascomycetes

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3521-6. doi: 10.1073/pnas.1522907113. Epub 2016 Mar 15.

Abstract

Production of ribosomally synthesized and posttranslationally modified peptides (RiPPs) has rarely been reported in fungi, even though organisms of this kingdom have a long history as a prolific source of natural products. Here we report an investigation of the phomopsins, antimitotic mycotoxins. We show that phomopsin is a fungal RiPP and demonstrate the widespread presence of a pathway for the biosynthesis of a family of fungal cyclic RiPPs, which we term dikaritins. We characterize PhomM as an S-adenosylmethionine-dependent α-N-methyltransferase that converts phomopsin A to an N,N-dimethylated congener (phomopsin E), and show that the methyltransferases involved in dikaritin biosynthesis have evolved differently and likely have broad substrate specificities. Genome mining studies identified eight previously unknown dikaritins in different strains, highlighting the untapped capacity of RiPP biosynthesis in fungi and setting the stage for investigating the biological activities and unknown biosynthetic transformations of this family of fungal natural products.

Keywords: RiPP; biosynthesis; methyltransferase; mycotoxin; posttranslational modification.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Antimitotic Agents / chemistry
  • Antimitotic Agents / metabolism
  • Ascomycota / genetics
  • Ascomycota / metabolism*
  • Biological Products / chemistry
  • Biological Products / metabolism
  • Biosynthetic Pathways
  • Fungal Proteins / biosynthesis
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Genes, Fungal
  • Molecular Sequence Data
  • Multigene Family
  • Mycotoxins / biosynthesis*
  • Mycotoxins / chemistry
  • Mycotoxins / genetics
  • Protein Methyltransferases / genetics
  • Protein Methyltransferases / metabolism
  • Protein Processing, Post-Translational
  • Repetitive Sequences, Amino Acid
  • Ribosomes / metabolism

Substances

  • Antimitotic Agents
  • Biological Products
  • Fungal Proteins
  • Mycotoxins
  • phomopsin
  • Protein Methyltransferases

Associated data

  • GENBANK/KU645826
  • GENBANK/KU645844