Temporal variation in the distribution of type-1 human astrovirus lineages in a settled population over 14 years

Arch Virol. 2016 Jun;161(6):1633-7. doi: 10.1007/s00705-016-2798-7. Epub 2016 Feb 29.

Abstract

Human astroviruses (HAstVs) are important enteric pathogens that are genetically and antigenically heterogeneous and can be classified into eight sero/genotypes (HAstV-1 to -8) and different lineages within each HAstV type. This study describes the genetic diversity of HAstVs circulating in southern Italy over 14 years. Molecular analysis of HAstV-1 strains showed that three different lineages (1a, 1b and 1d) of the predominant genotype were circulating during the study period. The study of an archival collection of HAstV strains offers a unique opportunity to evaluate the patterns of variation of HAstV infections over the years and to correlate the observed epidemiological changes to the genetic variability of HAstVs.

MeSH terms

  • Astroviridae Infections / epidemiology
  • Astroviridae Infections / virology*
  • Genetic Variation
  • Genome, Viral
  • Genotype
  • Humans
  • Italy / epidemiology
  • Mamastrovirus / classification
  • Mamastrovirus / genetics*
  • Molecular Epidemiology
  • Open Reading Frames
  • Phylogeny
  • Time Factors