Irradiation of crystalline silicon with femtosecond laser pulses produces a variety of quasi-periodic surface structures, among which sub-wavelength ripples creation is largely studied. Here we report an experimental investigation and a theoretical interpretation focusing on the seldom considered issue of quasi-periodic, micron spaced grooves formation. We characterize the morphological evolution of the grooves generation and experimentally single out the variation of the threshold fluence for their formation with the number of pulses N, while typical ripples simultaneously produced in the irradiated area are always considered for comparison. Our experimental findings evidence a power law dependence of the threshold fluence on the number of pulses both for ripples and grooves formation, typical of an incubation behavior. The incubation factor and single pulse threshold are (0.76 ± 0.04) and (0.20 ± 0.04) J/cm2 for ripples and (0.84 ± 0.03) and (0.54 ± 0.08) J/cm2 for grooves, respectively. Surface-scattered wave theory, which allows modeling irradiation with a single pulse on a rough surface, is exploited to interpret the observed structural modification of the surface textures. A simple, empirical scaling approach is proposed associating the surface structures generated in multiple-pulse experiments with the predictions of the surface-scattered wave theory, at laser fluencies around the grooves formation threshold. This, in turn, allows proposing a physical mechanism interpreting the grooves generation as well as the coexistence and relative prominence of grooves and ripples in the irradiated area.