Viability, morphology, and proteome of Mycobacterium smegmatis MSMEG_0319 knockout strain

Proteomics. 2016 Apr;16(7):1090-9. doi: 10.1002/pmic.201500054. Epub 2016 Mar 29.

Abstract

Mycobacterium tuberculosis Rv0228, a membrane protein, is predicted as a drug target through computational methods. MSMEG_0319 (MS0319) in Mycobacterium smegmatis mc(2) 155 is the ortholog of Rv0228. To study the effect of MS0319 protein on M. smegmatis, an MS0319 gene knockout strain (ΔMS0319) was generated via a homologous recombination technique in this study. The results showed that the lack of MS0319 protein in mc(2) 155 cells led to the loss of viability at nonpermissive temperature. Scanning electron microscopy and transmission electron microscopy observations showed drastic changes in cellular shape especially cell wall disruption in ΔMS0319 cells. Proteomic analysis of ΔMS0319 cells through LC-MS/MS revealed that 462 proteins had changes in their expressions by lacking MS0319 protein. The M. tuberculosis orthologs of these 462 proteins were found through BLASTp search and functional clustering and metabolic pathway enrichment were performed on the orthologs. The results revealed that most of them were enzymes involved in metabolism of carbohydrates and amino acids, indicating that Rv0228 played an important role in cellular metabolism. All these results suggested Rv0228 as a potential target for development of antituberculosis drugs.

Keywords: Drug target; M. smegmatis; M. tuberculosis; MSMEG_0319; Membrane protein; Microbiology; Rv0228.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / analysis
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Cluster Analysis
  • Drug Discovery
  • Gene Knockout Techniques*
  • Hot Temperature
  • Membrane Proteins / analysis
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Microbial Viability / genetics
  • Mycobacterium smegmatis / genetics*
  • Mycobacterium smegmatis / physiology*
  • Proteome / analysis
  • Proteome / genetics*
  • Proteome / metabolism
  • Proteomics / methods*

Substances

  • Bacterial Proteins
  • Membrane Proteins
  • Proteome