Sensor histidine kinase is a β-lactam receptor and induces resistance to β-lactam antibiotics

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):1648-53. doi: 10.1073/pnas.1520300113. Epub 2016 Feb 1.

Abstract

β-Lactams disrupt bacterial cell wall synthesis, and these agents are the most widely used antibiotics. One of the principle mechanisms by which bacteria resist the action of β-lactams is by producing β-lactamases, enzymes that degrade β-lactams. In Gram-negative bacteria, production of β-lactamases is often induced in response to the antibiotic-associated damage to the cell wall. Here, we have identified a previously unidentified mechanism that governs β-lactamase production. In the Gram-negative enteric pathogen Vibrio parahaemolyticus, we found a histidine kinase/response regulator pair (VbrK/VbrR) that controls expression of a β-lactamase. Mutants lacking either VbrK or VbrR do not produce the β-lactamase and are no longer resistant to β-lactam antibiotics. Notably, VbrK autophosphorylation is activated by β-lactam antibiotics, but not by other lactams. However, single amino acid substitutions in the putative periplasmic binding pocket of VbrK leads its phosphorylation in response to both β-lactam and other lactams, suggesting that this kinase is a β-lactam receptor that can directly detect β-lactam antibiotics instead of detecting the damage to cell wall resulting from β-lactams. In strong support of this idea, we found that purified periplasmic sensor domain of VbrK binds penicillin, and that such binding is critical for VbrK autophosphorylation and β-lactamase production. Direct recognition of β-lactam antibiotics by a histidine kinase receptor may represent an evolutionarily favorable mechanism to defend against β-lactam antibiotics.

Keywords: Vibrio; histidine kinase; β-lactam receptor; β-lactamase.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Anti-Bacterial Agents / pharmacology*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Carbenicillin / pharmacology
  • Conserved Sequence
  • Drug Resistance, Microbial / drug effects*
  • Gene Expression Regulation, Bacterial / drug effects
  • Histidine Kinase
  • Membrane Proteins / chemistry
  • Membrane Proteins / metabolism
  • Molecular Sequence Data
  • Mutation / genetics
  • Phosphorylation / drug effects
  • Protein Binding / drug effects
  • Protein Kinases / metabolism*
  • Protein Structure, Tertiary
  • Sequence Analysis, RNA
  • Substrate Specificity / drug effects
  • Transcription, Genetic / drug effects
  • Vibrio parahaemolyticus / drug effects
  • Vibrio parahaemolyticus / genetics
  • beta-Lactamases / metabolism
  • beta-Lactams / metabolism*

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Membrane Proteins
  • beta-Lactams
  • Protein Kinases
  • Histidine Kinase
  • beta-Lactamases
  • Carbenicillin