A Bayesian Network-based approach for discovering oral cancer candidate biomarkers

Annu Int Conf IEEE Eng Med Biol Soc. 2015:2015:7663-6. doi: 10.1109/EMBC.2015.7320167.

Abstract

Oral cancer can arise in the head and neck region. Due to the aggressive nature of the disease, which often leads to poor prognosis, Oral Squamous Cell Carcinoma (OSCC) constitutes the 8(th) most common neoplasms in humans. In the present work we formulate gene interaction network from oral cancer genomic data using Dynamic Bayesian Networks (DBNs). Four modules were extracted after applying a clustering technique to the network. We consequently explore them by applying topological and functional analysis methods in order to identify significant network nodes. Our analysis revealed that these important nodes may correspond to candidate biomarkers of the disease.

MeSH terms

  • Bayes Theorem*
  • Biomarkers, Tumor / genetics*
  • Carcinoma, Squamous Cell / genetics*
  • Carcinoma, Squamous Cell / pathology
  • Databases, Factual
  • Gene Expression Regulation, Neoplastic
  • Gene Regulatory Networks*
  • Genomics / methods
  • Humans
  • Mouth Neoplasms / genetics*
  • Mouth Neoplasms / pathology

Substances

  • Biomarkers, Tumor