Infrared spectroscopic studies on reaction induced conformational changes in the NADH ubiquinone oxidoreductase (complex I)

Biochim Biophys Acta. 2016 Jul;1857(7):922-7. doi: 10.1016/j.bbabio.2015.12.005. Epub 2015 Dec 15.

Abstract

Redox-dependent conformational changes are currently discussed to be a crucial part of the reaction mechanism of the respiratory complex I. Specialized difference Fourier transform infrared techniques allow the detection of side-chain movements and minute secondary structure changes. For complex I, (1)H/(2)H exchange kinetics of the amide modes revealed a better accessibility of the backbone in the presence of NADH and quinone. Interestingly, the presence of phospholipids, that is crucial for the catalytic activity of the isolated enzyme complex, changes the overall conformation. When comparing complex I samples from different species, very similar electrochemically induced FTIR difference spectra and very similar rearrangements are reported. Finally, the information obtained with variants and from Zn(2+) inhibited samples for the conformational reorganization of complex I upon electron transfer are discussed in this review. This article is part of a Special Issue entitled Respiratory complex I, edited by Volker Zickermann and Ulrich Brandt.

Keywords: Bioenergetics; Complex I; H/D exchange; Infrared; Spectroelectrochemistry.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Binding Sites
  • Catalysis
  • Electron Transport
  • Electron Transport Complex I / chemistry*
  • Electron Transport Complex I / ultrastructure*
  • Enzyme Activation
  • Models, Chemical
  • Molecular Dynamics Simulation
  • NAD / chemistry
  • NAD / ultrastructure*
  • Oxidation-Reduction
  • Protein Binding
  • Protein Conformation
  • Reactive Oxygen Species / chemical synthesis
  • Spectrophotometry, Infrared / methods*
  • Structure-Activity Relationship
  • Ubiquinone / chemistry*
  • Ubiquinone / ultrastructure*

Substances

  • Reactive Oxygen Species
  • NAD
  • Ubiquinone
  • Electron Transport Complex I