Structural Correlation of the Neck Coil with the Coiled-coil (CC1)-Forkhead-associated (FHA) Tandem for Active Kinesin-3 KIF13A

J Biol Chem. 2016 Feb 12;291(7):3581-94. doi: 10.1074/jbc.M115.689091. Epub 2015 Dec 17.

Abstract

Processive kinesin motors often contain a coiled-coil neck that controls the directionality and processivity. However, the neck coil (NC) of kinesin-3 is too short to form a stable coiled-coil dimer. Here, we found that the coiled-coil (CC1)-forkhead-associated (FHA) tandem (that is connected to NC by Pro-390) of kinesin-3 KIF13A assembles as an extended dimer. With the removal of Pro-390, the NC-CC1 tandem of KIF13A unexpectedly forms a continuous coiled-coil dimer that can be well aligned into the CC1-FHA dimer. The reverse introduction of Pro-390 breaks the NC-CC1 coiled-coil dimer but provides the intrinsic flexibility to couple NC with the CC1-FHA tandem. Mutations of either NC, CC1, or the FHA domain all significantly impaired the motor activity. Thus, the three elements within the NC-CC1-FHA tandem of KIF13A are structurally interrelated to form a stable dimer for activating the motor. This work also provides the first direct structural evidence to support the formation of a coiled-coil neck by the short characteristic neck domain of kinesin-3.

Keywords: KIF13A; intracellular trafficking; kinesin; molecular motor; neck coil; structural biology; x-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Autophagy-Related Proteins
  • Conserved Sequence
  • Crystallography, X-Ray
  • Dimerization
  • Intracellular Signaling Peptides and Proteins / chemistry
  • Intracellular Signaling Peptides and Proteins / genetics
  • Intracellular Signaling Peptides and Proteins / metabolism
  • Kinesins / chemistry*
  • Kinesins / genetics
  • Kinesins / metabolism
  • Mice
  • Models, Molecular*
  • Molecular Dynamics Simulation
  • Molecular Sequence Data
  • Peptide Fragments / chemistry
  • Peptide Fragments / metabolism
  • Pliability
  • Point Mutation
  • Protein Conformation
  • Protein Folding
  • Protein Stability
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Tandem Repeat Sequences

Substances

  • Autophagy-Related Proteins
  • Intracellular Signaling Peptides and Proteins
  • KIF13A protein, mouse
  • Peptide Fragments
  • Rb1cc1 protein, mouse
  • Recombinant Proteins
  • Kinesins

Associated data

  • PDB/3FM8
  • PDB/3KIN
  • PDB/4EGX
  • PDB/5DJN
  • PDB/5DJO