Benzoate degradation by Rhodococcus opacus 1CP after dormancy: Characterization of dioxygenases involved in the process

J Environ Sci Health B. 2016;51(3):182-91. doi: 10.1080/03601234.2015.1108814. Epub 2015 Dec 15.

Abstract

The process of benzoate degradation by strain Rhodococcus opacus 1CP after a five-year dormancy was investigated and its peculiarities were revealed. The strain was shown to be capable of growth on benzoate at a concentration of up to 10 g L(-1). The substrate specificity of benzoate dioxygenase (BDO) during the culture growth on a medium with a low (200-250 mg L(-1)) and high (4 g L(-1)) concentration of benzoate was assessed. BDO of R. opacus 1CP was shown to be an extremely narrow specificity enzyme. Out of 31 substituted benzoates, only with one, 3-chlorobenzoate, its activity was higher than 9% of that of benzoate. Two dioxygenases, catechol 1,2-dioxygenase (Cat 1,2-DO) and protocatechuate 3,4-dioxygenase (PCA 3,4-DO), were identified in a cell-free extract, purified and characterized. The substrate specificity of Cat 1,2-DO isolated from cells of strain 1CP after the dormancy was found to differ significantly from that of Cat 1,2-DO isolated earlier from cells of this strain grown on benzoate. By its substrate specificity, the described Cat 1,2-DO was close to the Cat 1,2-DO from strain 1CP grown on 4-methylbenzoate. Neither activity nor inhibition by protocatechuate was observed during the reaction of Cat 1,2-DO with catechol, and catechol had no inhibitory effect on the reaction of PCA 3,4-DO with protocatechuate.

Keywords: Rhodococcus opacus 1CP; benzoate; benzoate dioxygenase; catechol 1,2-dioxygenase; protocatechuate 3,4-dioxygenase; substrate specificity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Benzoates / metabolism
  • Biodegradation, Environmental
  • Catechol 1,2-Dioxygenase / metabolism
  • Catechols / metabolism
  • Cell-Free System
  • Chlorobenzoates / metabolism
  • Dioxygenases / metabolism*
  • Hydroxybenzoates / metabolism
  • Protocatechuate-3,4-Dioxygenase / metabolism
  • Rhodococcus / metabolism*
  • Rhodococcus / physiology
  • Substrate Specificity

Substances

  • Benzoates
  • Catechols
  • Chlorobenzoates
  • Hydroxybenzoates
  • 3-chlorobenzoic acid
  • protocatechuic acid
  • 4-toluic acid
  • Dioxygenases
  • Catechol 1,2-Dioxygenase
  • Protocatechuate-3,4-Dioxygenase
  • catechol