Mesopelagic N2 Fixation Related to Organic Matter Composition in the Solomon and Bismarck Seas (Southwest Pacific)

PLoS One. 2015 Dec 11;10(12):e0143775. doi: 10.1371/journal.pone.0143775. eCollection 2015.

Abstract

Dinitrogen (N2) fixation was investigated together with organic matter composition in the mesopelagic zone of the Bismarck (Transect 1) and Solomon (Transect 2) Seas (Southwest Pacific). Transparent exopolymer particles (TEP) and the presence of compounds sharing molecular formulae with saturated fatty acids and sugars, as well as dissolved organic matter (DOM) compounds containing nitrogen (N) and phosphorus (P) were higher on Transect 1 than on Transect 2, while oxygen concentrations showed an opposite pattern. N2 fixation rates (up to ~1 nmol N L-1 d-1) were higher in Transect 1 than in Transect 2, and correlated positively with TEP, suggesting a dependence of diazotroph activity on organic matter. The scores of the multivariate ordination of DOM molecular formulae and their relative abundance correlated negatively with bacterial abundances and positively with N2 fixation rates, suggesting an active bacterial exploitation of DOM and its use to sustain diazotrophic activity. Sequences of the nifH gene clustered with Alpha-, Beta-, Gamma- and Deltaproteobacteria, and included representatives from Clusters I, III and IV. A third of the clone library included sequences close to the potentially anaerobic Cluster III, suggesting that N2 fixation was partially supported by presumably particle-attached diazotrophs. Quantitative polymerase chain reaction (qPCR) primer-probe sets were designed for three phylotypes and showed low abundances, with a phylotype within Cluster III at up to 103 nifH gene copies L-1. These results provide new insights into the ecology of non-cyanobacterial diazotrophs and suggest that organic matter sustains their activity in the mesopelagic ocean.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alphaproteobacteria / classification
  • Alphaproteobacteria / genetics
  • Alphaproteobacteria / metabolism*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Betaproteobacteria / classification
  • Betaproteobacteria / genetics
  • Betaproteobacteria / metabolism*
  • Carbohydrate Metabolism
  • Carbohydrates / chemistry
  • Deltaproteobacteria / classification
  • Deltaproteobacteria / genetics
  • Deltaproteobacteria / metabolism*
  • Gammaproteobacteria / classification
  • Gammaproteobacteria / genetics
  • Gammaproteobacteria / metabolism*
  • Gene Expression
  • Nitrogen / metabolism
  • Nitrogen Fixation / physiology*
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism
  • Pacific Ocean
  • Phylogeny*
  • Polymerase Chain Reaction
  • Seawater / chemistry
  • Seawater / microbiology

Substances

  • Bacterial Proteins
  • Carbohydrates
  • Oxidoreductases
  • nitrogenase reductase
  • Nitrogen

Grants and funding

This research was funded by Institut de Recherche pour le Développement. MB was funded by the People Programme (Marie Skłodowska-Curie Actions) of the European Union's Seventh Framework Programme (FP7/2007-2013) under Research Executive Agency (REA) grant agreement number 625185. PM was supported by funding from the US National Science Foundation (NSF) Division of Ocean Sciences (OCE) grant number 1130495. HB was supported by a PhD scholarship from the French Ministry of Research and Education. SPICE is a contribution to the CLIVAR and GEOTRACES International programs. The MoorSPICE cruise has been co-funded by NSF OCE grant number 1029487, by French Agence National de Recherche project ANR-09-BLAN-0233-01 and by Les Enveloppes Fluides et l'Environnement (INSU/LEFE) project Solwara.