Antiviral innate immunity through the lens of systems biology

Virus Res. 2016 Jun 15:218:10-7. doi: 10.1016/j.virusres.2015.11.024. Epub 2015 Dec 3.

Abstract

Cellular innate immunity poses the first hurdle against invading viruses in their attempt to establish infection. This antiviral response is manifested with the detection of viral components by the host cell, followed by transduction of antiviral signals, transcription and translation of antiviral effectors and leads to the establishment of an antiviral state. These events occur in a rather branched and interconnected sequence than a linear path. Traditionally, these processes were studied in the context of a single virus and a host component. However, with the advent of rapid and affordable OMICS technologies it has become feasible to address such questions on a global scale. In the discipline of Systems Biology', extensive omics datasets are assimilated using computational tools and mathematical models to acquire deeper understanding of complex biological processes. In this review we have catalogued and discussed the application of Systems Biology approaches in dissecting the antiviral innate immune responses.

Publication types

  • Review
  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Databases, Factual
  • Datasets as Topic
  • Gene Expression Regulation
  • Host-Pathogen Interactions / immunology*
  • Humans
  • Immunity, Innate*
  • Interferon Regulatory Factors / genetics
  • Interferon Regulatory Factors / immunology
  • Pathogen-Associated Molecular Pattern Molecules / immunology
  • Receptors, Pattern Recognition / genetics
  • Receptors, Pattern Recognition / immunology*
  • STAT Transcription Factors / genetics
  • STAT Transcription Factors / immunology
  • Signal Transduction
  • Systems Biology / methods*
  • Viral Proteins / genetics
  • Viral Proteins / immunology
  • Virus Diseases / genetics
  • Virus Diseases / immunology*
  • Virus Diseases / virology
  • Viruses / growth & development
  • Viruses / immunology*
  • Viruses / pathogenicity

Substances

  • Interferon Regulatory Factors
  • Pathogen-Associated Molecular Pattern Molecules
  • Receptors, Pattern Recognition
  • STAT Transcription Factors
  • Viral Proteins