Neutron crystallographic studies reveal hydrogen bond and water-mediated interactions between a carbohydrate-binding module and its bound carbohydrate ligand

Biochemistry. 2015 Oct 27;54(42):6435-8. doi: 10.1021/acs.biochem.5b01058. Epub 2015 Oct 13.

Abstract

Carbohydrate-binding modules (CBMs) are key components of many carbohydrate-modifying enzymes. CBMs affect the activity of these enzymes by modulating bonding and catalysis. To further characterize and study CBM-ligand binding interactions, neutron crystallographic studies of an engineered family 4-type CBM in complex with a branched xyloglucan ligand were conducted. The first neutron crystal structure of a CBM-ligand complex reported here shows numerous atomic details of hydrogen bonding and water-mediated interactions and reveals the charged state of key binding cleft amino acid side chains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Carbohydrate Metabolism*
  • Carbohydrates / chemistry*
  • Catalytic Domain
  • Crystallography, X-Ray
  • Endo-1,4-beta Xylanases / chemistry*
  • Endo-1,4-beta Xylanases / metabolism*
  • Enzymes / chemistry
  • Enzymes / metabolism
  • Glucans / chemistry
  • Glucans / metabolism
  • Hydrogen Bonding
  • Ligands
  • Models, Molecular
  • Neutrons
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Receptors, Cell Surface / chemistry
  • Receptors, Cell Surface / metabolism
  • Rhodothermus / enzymology
  • Water
  • Xylans / chemistry
  • Xylans / metabolism

Substances

  • Bacterial Proteins
  • Carbohydrates
  • Enzymes
  • Glucans
  • Ligands
  • Receptors, Cell Surface
  • Xylans
  • saccharide-binding proteins
  • Water
  • xyloglucan
  • Endo-1,4-beta Xylanases