Identification of a novel, CF-causing compound genotype (p.S1159P and p.Y569H) using an NGS-based assay: Novel CF-causing compound p.S1159P and p.Y569H genotype

Gene. 2016 Jan 10;575(2 Pt 2):567-569. doi: 10.1016/j.gene.2015.09.040. Epub 2015 Sep 21.

Abstract

A novel combination of two rare pathogenic cystic fibrosis-causing mutations, p.S1159P and p.Y569H, was detected in a patient of 17 years age who suffered from pancreatic insufficiency of unknown etiology. Both mutations were previously described in compound heterozygous patients with moderate lung disease, who carried p.F508del on the other allele. However, this newly described combination of alleles is unusually associated with general gastrointestinal manifestations. Both mutations managed to be identified by virtue of using the Ion PGM next-generation sequencing (NGS) platform, thereby making our work a “proof of concept” for clinical application of a new NGS technology in conjunction with the developed software for variant annotation.

Keywords: CF mild phenotype; CF-causing genotype; Next-generation sequencing; Pancreatic insufficiency; Rare mutations.

Publication types

  • Case Reports

MeSH terms

  • Adolescent
  • Cystic Fibrosis / diagnosis
  • Cystic Fibrosis / genetics
  • Cystic Fibrosis Transmembrane Conductance Regulator / genetics*
  • Exocrine Pancreatic Insufficiency / etiology
  • Exocrine Pancreatic Insufficiency / genetics*
  • Exocrine Pancreatic Insufficiency / pathology
  • Female
  • Genetic Testing / methods
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Mutation*
  • Sensitivity and Specificity

Substances

  • CFTR protein, human
  • Cystic Fibrosis Transmembrane Conductance Regulator