Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor

Development. 2015 Sep 15;142(18):3166-77. doi: 10.1242/dev.122747.

Abstract

MicroRNAs (miRNAs) have been implicated in regulating multiple processes during brain development in various species. However, the function of miRNAs in human brain development remains largely unexplored. Here, we provide a comprehensive analysis of miRNA expression of regionalized neural progenitor cells derived from human embryonic stem cells and human foetal brain. We found miR-92b-3p and miR-130b-5p to be specifically associated with neural progenitors and several miRNAs that display both age-specific and region-specific expression patterns. Among these miRNAs, we identified miR-10 to be specifically expressed in the human hindbrain and spinal cord, while being absent from rostral regions. We found that miR-10 regulates a large number of genes enriched for functions including transcription, actin cytoskeleton and ephrin receptor signalling. When overexpressed, miR-10 influences caudalization of human neural progenitor cells. Together, these data confirm a role for miRNAs in establishing different human neural progenitor populations. This dataset also provides a comprehensive resource for future studies investigating the functional role of different miRNAs in human brain development.

Keywords: Cell specification; MicroRNA; Neural development; Neural stem cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Analysis of Variance
  • Brain / embryology*
  • Brain / growth & development*
  • Cell Culture Techniques / methods
  • Cell Differentiation / physiology
  • Cell Line
  • Chromosomes, Artificial, Bacterial
  • DNA Primers / genetics
  • Flow Cytometry
  • Genes, Reporter / genetics
  • Genetic Vectors / genetics
  • Green Fluorescent Proteins
  • Humans
  • Lentivirus
  • MicroRNAs / genetics
  • MicroRNAs / metabolism*
  • Neural Stem Cells / metabolism*
  • Neural Stem Cells / physiology
  • Polymerase Chain Reaction
  • Real-Time Polymerase Chain Reaction
  • Restriction Mapping
  • SOXB1 Transcription Factors / genetics

Substances

  • DNA Primers
  • MIRN10 microRNA, human
  • MicroRNAs
  • SOX1 protein, human
  • SOXB1 Transcription Factors
  • Green Fluorescent Proteins

Associated data

  • GEO/GSE71204