Correlated spectroscopic imaging of calf muscle in three spatial dimensions using group sparse reconstruction of undersampled single and multichannel data

Magn Reson Med. 2015 Nov;74(5):1199-208. doi: 10.1002/mrm.25988. Epub 2015 Sep 18.

Abstract

Purpose: To implement a 5D (three spatial + two spectral) correlated spectroscopic imaging sequence for application to human calf.

Theory and methods: Nonuniform sampling was applied across the two phase encoded dimensions and the indirect spectral dimension of an echo planar-correlated spectroscopic imaging sequence. Reconstruction was applied that minimized the group sparse mixed ℓ2,1-norm of the data. Multichannel data were compressed using a sensitivity map-based approach with a spatially dependent transform matrix and utilized the self-sparsity of the individual coil images to simplify the reconstruction.

Results: Single channel data with 8× and 16× undersampling are shown in the calf of a diabetic patient. A 15-channel scan with 12× undersampling of a healthy volunteer was reconstructed using 5 virtual channels and compared to a fully sampled single slice scan. Group sparse reconstruction faithfully reconstructs the lipid cross peaks much better than ℓ1 minimization.

Conclusion: COSY spectra can be acquired over a 3D spatial volume with scan time under 15 min using echo planar readout with highly undersampled data and group sparse reconstruction.

Keywords: 3D spectroscopic imaging; EP-COSI; calf muscle; compressed sensing; group sparsity; nonuniform sampling.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adult
  • Algorithms
  • Humans
  • Imaging, Three-Dimensional / methods*
  • Magnetic Resonance Imaging / methods*
  • Middle Aged
  • Muscle, Skeletal / anatomy & histology*
  • Muscle, Skeletal / chemistry
  • Muscle, Skeletal / physiology
  • Signal Processing, Computer-Assisted