Protein is the functional actor of life. Research on protein damage induced by nanomaterials may give insight into the toxicity mechanisms of nanoparticles. Studying nano silver over the impact of the structure and function of catalase (CAT) at the molecular level, is of great significance for a comprehensive evaluation of their toxic effects. The toxic effects of nanoAg on catalase were thoroughly investigated using steady state and time resolved fluorescence quenching measurements, ultraviolet-visible absorption spectroscopy, resonance light scattering spectroscopy (RLS), circular dichroism spectroscopy (CD) and transmission electron microscopy (TEM). NanoAg could decrease the amount of alpha-helix and increase the beta sheet structure, leading to loose the skeleton structure of catalase. The characteristic fluorescence of catalase was obviously quenched, which showed the exposal of internal hydrophobic amino acids enhanced, and its quenching type is dynamic quenching. The result of RLS and TEM showed that the distribution and size of nanoAg become more uniform and smaller after their interaction, resulting in a decrease of RLS intensity. NanoAg could make the activity of catalase rise. By changing the structure of catalase, nanoAg increases its enzymatic activity to a certain extent, breaking down its balance in vivo, thereby affecting the normal physiological activities. NanoAg has obvious toxic effects on catalase. This paper provided a new perspective and method for the toxic effects of nanoAg to biological macromolecules; provided basic data and reference gist for the hygienics and toxicology studies of nanoAg. It is conducive to the toxicity prevention and control work of nanoAg, promoting nano-technology applied to human production and living better.