Diversity in the structures and ligand-binding sites of nematode fatty acid and retinol-binding proteins revealed by Na-FAR-1 from Necator americanus

Biochem J. 2015 Nov 1;471(3):403-14. doi: 10.1042/BJ20150068. Epub 2015 Aug 28.

Abstract

Fatty acid and retinol-binding proteins (FARs) comprise a family of unusual α-helix rich lipid-binding proteins found exclusively in nematodes. They are secreted into host tissues by parasites of plants, animals and humans. The structure of a FAR protein from the free-living nematode Caenorhabditis elegans is available, but this protein [C. elegans FAR-7 (Ce-FAR-7)] is from a subfamily of FARs that does not appear to be important at the host/parasite interface. We have therefore examined [Necator americanus FAR-1 (Na-FAR-1)] from the blood-feeding intestinal parasite of humans, N. americanus. The 3D structure of Na-FAR-1 in its ligand-free and ligand-bound forms, determined by NMR (nuclear magnetic resonance) spectroscopy and X-ray crystallography respectively, reveals an α-helical fold similar to Ce-FAR-7, but Na-FAR-1 possesses a larger and more complex internal ligand-binding cavity and an additional C-terminal α-helix. Titration of apo-Na-FAR-1 with oleic acid, analysed by NMR chemical shift perturbation, reveals that at least four distinct protein-ligand complexes can be formed. Na-FAR-1 and possibly other FARs may have a wider repertoire for hydrophobic ligand binding, as confirmed in the present study by our finding that a range of neutral and polar lipids co-purify with the bacterially expressed recombinant protein. Finally, we show by immunohistochemistry that Na-FAR-1 is present in adult worms with a tissue distribution indicative of possible roles in nutrient acquisition by the parasite and in reproduction in the male.

Keywords: Necator americanus; X-ray; fatty acid-binding protein; nematode; nuclear magnetic resonance (NMR); parasite; protein structure; retinol-binding protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • Caenorhabditis elegans / metabolism
  • Caenorhabditis elegans / pathogenicity
  • Caenorhabditis elegans Proteins / chemistry
  • Caenorhabditis elegans Proteins / metabolism
  • Carrier Proteins / chemistry
  • Carrier Proteins / metabolism
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Host-Parasite Interactions*
  • Ligands
  • Necator americanus / chemistry
  • Necator americanus / metabolism*
  • Necator americanus / pathogenicity
  • Necatoriasis / metabolism*
  • Necatoriasis / parasitology
  • Reproduction
  • Retinol-Binding Proteins / chemistry
  • Retinol-Binding Proteins / metabolism*

Substances

  • Caenorhabditis elegans Proteins
  • Carrier Proteins
  • FAR protein, C elegans
  • Fatty Acids
  • Ligands
  • Retinol-Binding Proteins