Isolation of an aryloxyphenoxy propanoate (AOPP) herbicide-degrading strain Rhodococcus ruber JPL-2 and the cloning of a novel carboxylesterase gene (feh)

Braz J Microbiol. 2015 Jun 1;46(2):425-32. doi: 10.1590/S1517-838246220140208. eCollection 2015 Jun.

Abstract

The strain JPL-2, capable of degrading fenoxaprop-P-ethyl (FE), was isolated from the soil of a wheat field and identified as Rhodococcus ruber. This strain could utilize FE as its sole carbon source and degrade 94.6% of 100 mg L(-1) FE in 54 h. Strain JPL-2 could also degrade other aryloxyphenoxy propanoate (AOPP) herbicides. The initial step of the degradation pathway is to hydrolyze the carboxylic acid ester bond. A novel esterase gene feh, encoding the FE-hydrolyzing carboxylesterase (FeH) responsible for this initial step, was cloned from strain JPL-2. Its molecular mass was approximately 39 kDa, and the catalytic efficiency of FeH followed the order of FE > quizalofop-P-ethyl > clodinafop-propargyl > cyhalofop-butyl > fluazifop-P-butyl > haloxyfop-P-methyl > diclofop-methy, which indicated that the chain length of the alcohol moiety strongly affected the hydrolysis activity of the FeH toward AOPP herbicides.

Keywords: FE -hydrolyzing carboxylesterase gene; Rhodococcus ruber JPL-2; fenoxaprop-P-ethyl; microbial degradation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biotransformation
  • Carboxylesterase / chemistry
  • Carboxylesterase / genetics*
  • Carboxylesterase / metabolism*
  • Cloning, Molecular
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Herbicides / metabolism*
  • Molecular Sequence Data
  • Molecular Weight
  • Oxazoles / metabolism*
  • Phylogeny
  • Propionates / metabolism*
  • RNA, Ribosomal, 16S / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Rhodococcus / enzymology
  • Rhodococcus / genetics
  • Rhodococcus / isolation & purification*
  • Rhodococcus / metabolism*
  • Sequence Analysis, DNA
  • Soil Microbiology
  • Substrate Specificity
  • Triticum / growth & development

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Herbicides
  • Oxazoles
  • Propionates
  • RNA, Ribosomal, 16S
  • Recombinant Proteins
  • fenoxaprop ethyl
  • Carboxylesterase

Associated data

  • GENBANK/JX110619
  • GENBANK/KF601763