Quantitative Variation in Responses to Root Spatial Constraint within Arabidopsis thaliana

Plant Cell. 2015 Aug;27(8):2227-43. doi: 10.1105/tpc.15.00335. Epub 2015 Aug 4.

Abstract

Among the myriad of environmental stimuli that plants utilize to regulate growth and development to optimize fitness are signals obtained from various sources in the rhizosphere that give an indication of the nutrient status and volume of media available. These signals include chemical signals from other plants, nutrient signals, and thigmotropic interactions that reveal the presence of obstacles to growth. Little is known about the genetics underlying the response of plants to physical constraints present within the rhizosphere. In this study, we show that there is natural variation among Arabidopsis thaliana accessions in their growth response to physical rhizosphere constraints and competition. We mapped growth quantitative trait loci that regulate a positive response of foliar growth to short physical constraints surrounding the root. This is a highly polygenic trait and, using quantitative validation studies, we showed that natural variation in EARLY FLOWERING3 (ELF3) controls the link between root constraint and altered shoot growth. This provides an entry point to study how root and shoot growth are integrated to respond to environmental stimuli.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms
  • Arabidopsis / classification
  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Arabidopsis Proteins / genetics*
  • Epistasis, Genetic
  • Flowers / genetics
  • Flowers / growth & development
  • Genotype
  • Models, Genetic
  • Phenotype
  • Plant Leaves / genetics
  • Plant Leaves / growth & development
  • Plant Roots / genetics*
  • Plant Roots / growth & development
  • Plant Shoots / genetics
  • Plant Shoots / growth & development
  • Quantitative Trait Loci / genetics*
  • Rhizosphere*
  • Species Specificity
  • Time Factors
  • Transcription Factors / genetics

Substances

  • Arabidopsis Proteins
  • ELF3 protein, Arabidopsis
  • Transcription Factors