Time scale evolution of avipoxviruses

Infect Genet Evol. 2015 Oct:35:75-81. doi: 10.1016/j.meegid.2015.07.031. Epub 2015 Jul 29.

Abstract

Avipoxviruses are divided into three clades: canarypox-like viruses, fowlpox-like viruses, and psittacinepox-like viruses. Several molecular clock and demographic models available in the BEAST package were compared on three avipoxvirus genes (P4b, cnpv186 and DNA polymerase genes), which enabled to determine that avipoxviruses evolved at a rate of 2-8×10(-5)substitution/site/year, in the range of poxviruses previously reported evolution rates. In addition, the date of mean time of divergence of avipoxviruses from a common ancestor was extrapolated to be about 10,000-30,000years ago, at the same period as modern poxvirus species. Our findings will facilitate epidemiological investigations on avipoxviruses' spread, origin and circulation.

Keywords: Avipoxvirus; DNA virus; Evolution; Molecular clock.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Avipoxvirus / classification*
  • Avipoxvirus / genetics*
  • Evolution, Molecular
  • Mutation Rate
  • Phylogeny
  • Viral Proteins / genetics*

Substances

  • Viral Proteins