S-SAD phasing of monoclinic histidine kinase from Brucella abortus combining data from multiple crystals and orientations: an example of data-collection strategy and a posteriori analysis of different data combinations

Acta Crystallogr D Biol Crystallogr. 2015 Jul;71(Pt 7):1433-43. doi: 10.1107/S1399004715007622. Epub 2015 Jun 30.

Abstract

The histidine kinase (HK) domain belonging to the light-oxygen-voltage histidine kinase (LOV-HK) from Brucella abortus is a member of the HWE family, for which no structural information is available, and has low sequence identity (20%) to the closest HK present in the PDB. The `off-edge' S-SAD method in macromolecular X-ray crystallography was used to solve the structure of the HK domain from LOV-HK at low resolution from crystals in a low-symmetry space group (P21) and with four copies in the asymmetric unit (∼108 kDa). Data were collected both from multiple crystals (diffraction limit varying from 2.90 to 3.25 Å) and from multiple orientations of the same crystal, using the κ-geometry goniostat on SOLEIL beamline PROXIMA 1, to obtain `true redundancy'. Data from three different crystals were combined for structure determination. An optimized HK construct bearing a shorter cloning artifact yielded crystals that diffracted X-rays to 2.51 Å resolution and that were used for final refinement of the model. Moreover, a thorough a posteriori analysis using several different combinations of data sets allowed us to investigate the impact of the data-collection strategy on the success of the structure determination.

Keywords: HWE family; anomalous signal; experimental phasing; two-component system.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brucella abortus / chemistry
  • Brucella abortus / enzymology*
  • Crystallization
  • Crystallography, X-Ray / methods
  • Histidine Kinase
  • Models, Molecular
  • Protein Conformation
  • Protein Kinases / chemistry*
  • Protein Structure, Tertiary

Substances

  • Protein Kinases
  • Histidine Kinase