SNP in pre-miR-1666 decreases mature miRNA expression and is associated with chicken performance

Genome. 2015 Feb;58(2):81-90. doi: 10.1139/gen-2015-0001. Epub 2015 May 6.

Abstract

Polymorphisms in miRNA genes could potentially alter various biological processes by influencing the processing and (or) target selection of miRNAs. The rs14120863 (C > G) mutation, which we characterized in a Gushi-Anka F2 resource population, resides in the precursor region of miR-1666. Association analysis with chicken carcass and growth traits showed that the SNP was significantly associated with carcass weight, evisceration weight, breast muscle weight, leg muscle weight, and body weight at 8 weeks of age, as well as some body size indexes including shank girth, chest breadth, breast bone length, and body slanting length, in the Gushi-Anka F2 resource population. Quantitative RT-PCR results showed that miR-1666 expression levels in muscle tissues differed within various genotypes. Experiment in DF1 cells further confirmed that the SNP in miR-1666 could significantly alter mature miRNA production. Subsequently, using dual-luciferase report assay, we verified that miR-1666 could perform its function through targeting of the CBFB gene. In conclusion, the SNP in the precursor of miR-1666 could significantly reduce mature miR-1666 production. It may further affect the function of miR-1666 through the target gene CBFB, hence it is associated with chicken growth traits.

Keywords: CBFB; SNP; biogenesis; biogenèse; chicken; microARN; microRNA; poulet.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Body Weight / genetics
  • Cell Line
  • Chickens / genetics*
  • Core Binding Factor beta Subunit / genetics
  • Female
  • Genotype
  • Male
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Muscles / metabolism
  • Nucleic Acid Conformation
  • Polymorphism, Single Nucleotide*
  • Reverse Transcriptase Polymerase Chain Reaction

Substances

  • Core Binding Factor beta Subunit
  • MicroRNAs