Prospective comprehensive genomic profiling of advanced gastric carcinoma cases reveals frequent clinically relevant genomic alterations and new routes for targeted therapies

Oncologist. 2015 May;20(5):499-507. doi: 10.1634/theoncologist.2014-0378. Epub 2015 Apr 16.

Abstract

Background: Gastric cancer (GC) is a major global cancer burden and the second most common cause of global cancer-related deaths. The addition of anti-ERBB2 (HER2) targeted therapy to chemotherapy improves survival for ERBB2-amplified advanced GC patients; however, the majority of GC patients do not harbor this alteration and thus cannot benefit from targeted therapy under current practice paradigms.

Materials and methods: Prospective comprehensive genomic profiling of 116 predominantly locally advanced or metastatic (90.0%) gastric cancer cases was performed to identify genomic alterations (GAs) associated with a potential response to targeted therapies approved by the U.S. Food and Drug Administration or targeted therapy-based clinical trials.

Results: Overall, 78% of GC cases harbored one clinically relevant GA or more, with the most frequent alterations being found in TP53 (50%), ARID1A (24%), KRAS (16%), CDH1 (15%), CDKN2A (14%), CCND1 (9.5%), ERBB2 (8.5%), PIK3CA (8.6%), MLL2 (6.9%), FGFR2 (6.0%), and MET (6.0%). Receptor tyrosine kinase genomic alterations were detected in 20.6% of cases, primarily ERBB2, FGFR2, and MET amplification, with ERBB2 alterations evenly split between amplifications and base substitutions. Rare BRAF mutations (2.6%) were also observed. One MET-amplified GC patient responded for 5 months to crizotinib, a multitargeted ALK/ROS1/MET inhibitor.

Conclusion: Comprehensive genomic profiling of GC identifies clinically relevant GAs that suggest benefit from targeted therapy including MET-amplified GC and ERBB2 base substitutions.

摘要

背景. 胃癌(GC)在全球范围都是严重的癌症负担,同时也是全球癌症相关死亡的第二大原因。化疗联合抗ERBB2(HER2)靶向治疗改善了ERBB2扩增的进展期胃癌患者的生存;但是多数胃癌患者的肿瘤中并没有这一基因变异,因此不能从这一治疗范例的靶向治疗中获益。

材料与方法. 对116例患者进行前瞻性综合性基因组分析,以鉴别与靶向治疗(美国食品和药物管理局批准的靶向治疗,或以靶向治疗为基础的临床试验)部分缓解相关的基因变异(GA),患者主要为局部进展期或转移性胃癌(90.0%)。

结果. 总体而言,78%的胃癌病例含有≥ 1个临床相关性GA。最常见的基因变异见于TP53(50%)、ARID1A(24%)、KRAS(16%)、CDH1(15%)、CDKN2A(14%)、CCND1(9.5%)、ERBB2(8.5%)、PIK3CA(8.6%)、MLL2(6.9%)、FGFR2(6.0%)和MET(6.0%)。20.6%的病例可检测到受体酪氨酸激酶基因变异,主要为ERBB2FGFR2MET扩增,而ERBB2变异中扩增和碱基置换各占一半。还观察到少量BRAF突变(2.6%)。一例MET扩增胃癌患者经克唑替尼(ALK/ROS1/MET多靶点抑制剂)治疗5个月有应答。

结论. 对胃癌进行综合性基因组分析可鉴别出临床相关性GA,提示可从针对包括MET扩增胃癌和ERBB2碱基置换在内的靶向治疗中获益。The Oncologist 2015;20:499–507

Keywords: Gastric cancer; MET; Mutation; Profiling; Sequencing; Targeted therapy.

MeSH terms

  • Carcinoma / genetics*
  • Carcinoma / pathology
  • Carcinoma / therapy
  • Female
  • Gene Expression Regulation, Neoplastic
  • Genomic Instability*
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Male
  • Molecular Targeted Therapy
  • Mutation
  • Neoplasm Proteins / biosynthesis
  • Neoplasm Proteins / genetics*
  • Stomach Neoplasms / genetics*
  • Stomach Neoplasms / pathology
  • Stomach Neoplasms / therapy
  • United States

Substances

  • Neoplasm Proteins