E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans

Sci Rep. 2015 Apr 15:5:9597. doi: 10.1038/srep09597.

Abstract

The discovery of RNA interference (RNAi) in C. elegans has had a major impact on scientific research, led to the rapid development of RNAi tools and has inspired RNA-based therapeutics. Astonishingly, nematodes, planaria and many insects take up double-stranded RNA (dsRNA) from their environment to elicit RNAi; the biological function of this mechanism is unclear. Recently, the E. coli OxyS non-coding RNA was shown to regulate gene expression in C. elegans when E. coli is offered as food. This was surprising given that C. elegans is unlikely to encounter E. coli in nature. To directly test the hypothesis that the E. coli OxyS non-coding RNA triggers the C. elegans RNAi pathway, we sequenced small RNAs from C. elegans after feeding with bacteria. We clearly demonstrate that the OxyS non-coding RNA does not trigger an RNAi response in C. elegans. We conclude that the biology of environmental RNAi remains to be discovered.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Caenorhabditis elegans / genetics*
  • Caenorhabditis elegans / microbiology
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics*
  • Gene Expression
  • Genome, Bacterial
  • Helminth Proteins / genetics
  • Nucleic Acid Conformation
  • RNA Interference*
  • RNA, Untranslated / chemistry
  • RNA, Untranslated / genetics*
  • Repressor Proteins / chemistry
  • Repressor Proteins / genetics*

Substances

  • Escherichia coli Proteins
  • Helminth Proteins
  • RNA, Untranslated
  • Repressor Proteins
  • che-2 protein, C elegans
  • oxyS small RNA, E coli