Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding

J Comput Aided Mol Des. 2015 Jul;29(7):609-18. doi: 10.1007/s10822-015-9839-2. Epub 2015 Mar 26.

Abstract

The polypeptide chain folding process appears to be a multi-stage phenomenon. The scientific community has recently devoted much attention to early stages of this process, with numerous attempts at simulating them--either experimentally or in silico. This paper presents a comparative analysis of the predicted and observed results of folding simulations. The proposed technique, based on statistical dictionaries, yields a global accuracy of 57%--a marked improvement over older approaches (with an accuracy of approximately 46%).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Amino Acids / chemistry
  • Computer Simulation
  • Databases, Protein
  • Models, Molecular*
  • Models, Statistical
  • Protein Conformation
  • Protein Folding*

Substances

  • Amino Acids