The complete mitochondrial genome of jade perch, Scortum barcoo (Perciformes: Terapontidae: Scortum)

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3346-7. doi: 10.3109/19401736.2015.1018215. Epub 2015 Mar 23.

Abstract

This is the first documentation of the complete mitochondrial genome sequence of the jade perch, Scortum barcoo. The 16,843 bp mitogenome containes 37 genes (13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes) and two main non-coding regions (the control region and the origin of the light strand replication) as do other vertebrate mitogenomes. The overall base composition of S. barcoo is 27.39% for A, 24.74% for T, 31.14% for C and 16.73% for G, with a slight A + T bias of 52.13%. All protein-coding genes are initiated with ATG except for COX1, which begin with GTG instead. Meanwhile, the termination codons of 13 protein-coding genes are varied with TAA, TAG, TA, T or AGG. The measure of complete mitogenome sequence of S. barcoo will provide fundamental data for the phylogenetic and biogeographic studies of the Terapontidae.

Keywords: Jade perch; Scortum barcoo; Terapontidae; mitochondrial genome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition
  • Codon
  • Gene Order
  • Genes, Mitochondrial
  • Genome Size
  • Genome, Mitochondrial*
  • Genomics*
  • Open Reading Frames
  • Perches / classification
  • Perches / genetics*
  • Regulatory Sequences, Nucleic Acid
  • Sequence Analysis, DNA
  • Whole Genome Sequencing

Substances

  • Codon