Real-time monitoring of enzyme-free strand displacement cascades by colorimetric assays

Nanoscale. 2015 Mar 19;7(13):5719-25. doi: 10.1039/c5nr00697j.

Abstract

The enzyme-free toehold-mediated strand displacement reaction has shown potential for building programmable DNA circuits, biosensors, molecular machines and chemical reaction networks. Here we report a simple colorimetric method using gold nanoparticles as signal generators for the real-time detection of the product of the strand displacement cascade. During the process the assembled gold nanoparticles can be separated, resulting in a color change of the solution. This assay can also be applied in complex mixtures, fetal bovine serum, and to detect single-base mismatches. These results suggest that this method could be of general utility to monitor more complex enzyme-free strand displacement reaction-based programmable systems or for further low-cost diagnostic applications.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Pair Mismatch / genetics
  • Base Sequence
  • Colorimetry / instrumentation*
  • DNA / chemistry*
  • DNA / genetics*
  • Enzymes
  • Equipment Design
  • Equipment Failure Analysis
  • Gold / chemistry*
  • Metal Nanoparticles / chemistry*
  • Metal Nanoparticles / ultrastructure
  • Molecular Sequence Data
  • Sequence Analysis, DNA / instrumentation*

Substances

  • Enzymes
  • Gold
  • DNA