Full genome sequence of guinea fowl coronavirus associated with fulminating disease

Virus Genes. 2015 Jun;50(3):514-7. doi: 10.1007/s11262-015-1183-z. Epub 2015 Feb 25.

Abstract

Guinea fowl coronavirus (GfCoV), a recently characterized avian coronavirus, was identified from outbreaks of fulminating disease (peracute enteritis) in guinea fowl in France. The full-length genomic sequence was determined to better understand its genetic relationship with avian coronaviruses. The full-length coding genome sequence was 26,985 nucleotides long with 11 open reading frames and no hemagglutinin-esterase gene: a genome organization identical to that of turkey coronavirus [5' untranslated region (UTR)-replicase (ORFs 1a, 1ab)-spike (S) protein-ORF3 (ORFs 3a, 3b)-small envelop (E or 3c) protein-membrane (M) protein-ORF5 (ORFs 4b, 4c, 5a, 5b)-nucleocapsid (N) protein (ORFs N and 6b)-3' UTR]. This is the first complete genome sequence of a GfCoV and confirms that the new virus belongs to group gammacoronaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bird Diseases / virology*
  • Birds
  • Cluster Analysis
  • Coronavirus / genetics*
  • Coronavirus / isolation & purification*
  • Coronavirus Infections / veterinary*
  • Coronavirus Infections / virology
  • France
  • Gene Order
  • Genome, Viral*
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Sequence Homology
  • Synteny

Substances

  • RNA, Viral

Associated data

  • GENBANK/LN610099