Accelerated five-dimensional echo planar J-resolved spectroscopic imaging: Implementation and pilot validation in human brain

Magn Reson Med. 2016 Jan;75(1):42-51. doi: 10.1002/mrm.25605. Epub 2015 Jan 19.

Abstract

Purpose: To implement an accelerated five-dimensional (5D) echo-planar J-resolved spectroscopic imaging sequence combining 3 spatial and 2 spectral encoding dimensions and to apply the sequence in human brain.

Methods: An echo planar readout was used to acquire a single spatial and a single spectral dimension during one readout. Nonuniform sampling was applied to the two phase-encoded spatial directions and the indirect spectral dimension. Nonlinear reconstruction was used to minimize the ℓ1-norm or the total variation and included a spectral mask to enhance sparsity. Retrospective reconstructions at multiple undersamplings were performed in phantom. Ten healthy volunteers were scanned with 8× undersampling and compared to a fully sampled single slice scan.

Results: Retrospective reconstruction of fully sampled phantom data showed excellent quality at 4×, 8×, 12×, and 16× undersampling using either reconstruction method. Reconstruction of prospectively acquired in vivo scans with 8× undersampling showed excellent quality in the occipito-parietal lobes and good quality in the frontal lobe, consistent with the fully sampled single slice scan.

Conclusion: By utilizing nonuniform sampling with nonlinear reconstruction, 2D J-resolved spectra can be acquired over a 3D spatial volume with a total scan time of 20 min, which is reasonable for in vivo studies.

Keywords: 3D spectroscopic imaging; J-resolved spectroscopic imaging; compressed sensing; echo-planar J-resolved spectroscopic imaging; human brain; nonuniform sampling.

Publication types

  • Evaluation Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Validation Study

MeSH terms

  • Adult
  • Algorithms*
  • Brain / anatomy & histology
  • Brain / metabolism*
  • Echo-Planar Imaging / methods*
  • Female
  • Humans
  • Image Enhancement / methods
  • Image Interpretation, Computer-Assisted / methods*
  • Imaging, Three-Dimensional / methods*
  • Male
  • Molecular Imaging / methods*
  • Pilot Projects
  • Reproducibility of Results
  • Sensitivity and Specificity