A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study

BMC Bioinformatics. 2014;15 Suppl 17(Suppl 17):S3. doi: 10.1186/1471-2105-15-S17-S3. Epub 2014 Dec 16.

Abstract

Background: Combining information from different studies is an important and useful practice in bioinformatics, including genome-wide association study, rare variant data analysis and other set-based analyses. Many statistical methods have been proposed to combine p-values from independent studies. However, it is known that there is no uniformly most powerful test under all conditions; therefore, finding a powerful test in specific situation is important and desirable.

Results: In this paper, we propose a new statistical approach to combining p-values based on gamma distribution, which uses the inverse of the p-value as the shape parameter in the gamma distribution.

Conclusions: Simulation study and real data application demonstrate that the proposed method has good performance under some situations.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Case-Control Studies
  • Computer Simulation
  • Genome-Wide Association Study*
  • Humans
  • Models, Statistical*