New molecular tools for the identification of 2 endangered smooth-hound sharks, Mustelus mustelus and Mustelus punctulatus

J Hered. 2015 Jan-Feb;106(1):123-30. doi: 10.1093/jhered/esu064. Epub 2014 Nov 25.

Abstract

The smooth-hounds represent a significant proportion of the elasmobranch catch in the Adriatic basin of the Mediterranean Sea, where the common (Mustelus mustelus) and blackspotted (Mustelus punctulatus) smooth-hounds co-occur. The 2 species share several morphological and morphometric characters that lead to frequent misidentification. In order to provide information useful for their species identification, we performed a morphological identification of several Mustelus specimens to select individuals unambiguously attributed to 1 of the 2 species, and assayed these with 3 new molecular tests. First, we developed and validated a mitochondrial DNA assay based on species-specific amplification of the cytochrome c oxidase subunit 1 (COI). Second, a fragment analysis of 15 microsatellites cross-amplified from several triakid species was performed to identify diagnostic loci. Finally, a length difference was identified in the internal transcribed spacer 2 (ITS2) region and a diagnostic test based on its amplification was established. All the samples classified morphologically as M. mustelus and M. punctulatus showed a species-specific profile using all the 3 molecular tests. In addition, cross-amplification of microsatellites allowed identification of 9 highly polymorphic loci that will be useful for the study of the mating system and population differentiation of the 2 species.

Keywords: ITS2; Mustelus; genetic identification; microsatellite loci; mitochondrial DNA; smooth-hound sharks.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Body Weights and Measures
  • DNA Primers / genetics
  • DNA, Mitochondrial / genetics
  • DNA, Ribosomal Spacer / genetics
  • Electron Transport Complex IV / genetics
  • Endangered Species*
  • Mediterranean Sea
  • Microsatellite Repeats / genetics
  • Sharks / anatomy & histology
  • Sharks / classification*
  • Sharks / genetics*
  • Skin Pigmentation / genetics
  • Species Specificity

Substances

  • DNA Primers
  • DNA, Mitochondrial
  • DNA, Ribosomal Spacer
  • Electron Transport Complex IV

Associated data

  • Dryad/10.5061/dryad.39Q83