Feature selection for better identification of subtypes of Guillain-Barré syndrome

Comput Math Methods Med. 2014:2014:432109. doi: 10.1155/2014/432109. Epub 2014 Sep 15.

Abstract

Guillain-Barré syndrome (GBS) is a neurological disorder which has not been explored using clustering algorithms. Clustering algorithms perform more efficiently when they work only with relevant features. In this work, we applied correlation-based feature selection (CFS), chi-squared, information gain, symmetrical uncertainty, and consistency filter methods to select the most relevant features from a 156-feature real dataset. This dataset contains clinical, serological, and nerve conduction tests data obtained from GBS patients. The most relevant feature subsets, determined with each filter method, were used to identify four subtypes of GBS present in the dataset. We used partitions around medoids (PAM) clustering algorithm to form four clusters, corresponding to the GBS subtypes. We applied the purity of each cluster as evaluation measure. After experimentation, symmetrical uncertainty and information gain determined a feature subset of seven variables. These variables conformed as a dataset were used as input to PAM and reached a purity of 0.7984. This result leads to a first characterization of this syndrome using computational techniques.

MeSH terms

  • Algorithms
  • Cluster Analysis
  • Computational Biology / methods
  • Databases, Factual
  • Guillain-Barre Syndrome / classification*
  • Guillain-Barre Syndrome / diagnosis*
  • Humans
  • Neural Conduction
  • Pattern Recognition, Automated*
  • Reproducibility of Results