De novo design of stable α-helices

Methods Mol Biol. 2014:1216:1-14. doi: 10.1007/978-1-4939-1486-9_1.

Abstract

Recent studies have elucidated key principles governing folding and stability of α-helices in short peptides and globular proteins. In this chapter we review briefly those principles and describe a protocol for the de novo design of highly stable α-helixes using the SEQOPT algorithm. This algorithm is based on AGADIR, the statistical mechanical theory for helix-coil transitions in monomeric peptides, and the tunneling algorithm for global sequence optimization.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Algorithms
  • Peptides / chemistry*
  • Protein Folding
  • Protein Stability
  • Protein Structure, Secondary

Substances

  • Peptides